Super Enhancer Details

General details

Super-Enhancer ID:	SE_00213
Genomic locus:	chr10:95186970-95243126
Size/Length:	56156 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_133337
Gene Symbol:	MYOF
Chromosome:	chr10
TSS:	95066185 (Transcription start site)
TES:	95242074 (Transcription end site)
Strand:	-
Number of Exons:	54
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr10:95186970-95243126
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00213

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000992	SE_00213	chr10	95186970	95189517	2547	275.48
C000993	SE_00213	chr10	95191700	95192921	1221	103.39
C000994	SE_00213	chr10	95193360	95202799	9439	3100
C000995	SE_00213	chr10	95202895	95206899	4004	1757.56
C000996	SE_00213	chr10	95217812	95220592	2780	446.08
C000997	SE_00213	chr10	95220682	95226899	6217	3100
C000998	SE_00213	chr10	95227516	95230064	2548	479.8
C000999	SE_00213	chr10	95230118	95232198	2080	312.05
C001000	SE_00213	chr10	95234785	95236417	1632	150.39
C001001	SE_00213	chr10	95239879	95243126	3247	3100