Super Enhancer Details

General details

Super-Enhancer ID:	SE_00217
Genomic locus:	chr12:110974372-111030619
Size/Length:	56247 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_139283
Gene Symbol:	PPTC7
Chromosome:	chr12
TSS:	110972236 (Transcription start site)
TES:	111021064 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr12:110974372-111030619
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00217

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001765	SE_00217	chr12	110974372	110977111	2739	367.68
C001766	SE_00217	chr12	110979521	110982773	3252	1984.39
C001767	SE_00217	chr12	110982843	110985246	2403	1046.77
C001768	SE_00217	chr12	110991845	110996854	5009	1955.07
C001769	SE_00217	chr12	110997577	111003076	5499	2870.56
C001770	SE_00217	chr12	111003243	111005314	2071	143.02
C001771	SE_00217	chr12	111010882	111017752	6870	2865.8
C001772	SE_00217	chr12	111017972	111024316	6344	3100
C001773	SE_00217	chr12	111027404	111030619	3215	3144.78