Super Enhancer Details

General details

Super-Enhancer ID:	SE_00218
Genomic locus:	chr9:32383078-32457013
Size/Length:	73935 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_002197
Gene Symbol:	ACO1
Chromosome:	chr9
TSS:	32384600 (Transcription start site)
TES:	32450832 (Transcription end site)
Strand:	+
Number of Exons:	21
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr9:32383078-32457013
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00218

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005896	SE_00218	chr9	32383078	32388451	5373	3100
C005897	SE_00218	chr9	32388493	32390058	1565	129.46
C005898	SE_00218	chr9	32390249	32392423	2174	207.59
C005899	SE_00218	chr9	32393397	32405479	12082	3100
C005900	SE_00218	chr9	32411901	32418264	6363	2768.18
C005901	SE_00218	chr9	32420803	32421980	1177	100.82
C005902	SE_00218	chr9	32422013	32428397	6384	2136.45
C005903	SE_00218	chr9	32429269	32432251	2982	590
C005904	SE_00218	chr9	32433830	32436302	2472	255.97
C005905	SE_00218	chr9	32441420	32442452	1032	95.46
C005906	SE_00218	chr9	32453277	32457013	3736	532.99