Super Enhancer Details

General details

Super-Enhancer ID:	SE_00219
Genomic locus:	chr21:34731483-34808362
Size/Length:	76879 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_005534
Gene Symbol:	IFNGR2
Chromosome:	chr21
TSS:	34775201 (Transcription start site)
TES:	34809828 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr21:34731483-34808362
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00219

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003763	SE_00219	chr21	34731483	34734237	2754	417.59
C003764	SE_00219	chr21	34745451	34747792	2341	833.2
C003765	SE_00219	chr21	34750982	34756583	5601	1796.76
C003766	SE_00219	chr21	34764185	34767312	3127	515.13
C003767	SE_00219	chr21	34768767	34770311	1544	201.01
C003768	SE_00219	chr21	34773865	34780226	6361	3100
C003769	SE_00219	chr21	34780307	34785135	4828	1350.06
C003770	SE_00219	chr21	34785232	34786512	1280	101.81
C003771	SE_00219	chr21	34789260	34794591	5331	3100
C003772	SE_00219	chr21	34797234	34798467	1233	106.17
C003773	SE_00219	chr21	34800099	34808362	8263	2484.71