Super Enhancer Details

General details

Super-Enhancer ID:	SE_00224
Genomic locus:	chr1:223887196-223937983
Size/Length:	50787 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001748
Gene Symbol:	CAPN2
Chromosome:	chr1
TSS:	223889294 (Transcription start site)
TES:	223963720 (Transcription end site)
Strand:	+
Number of Exons:	21
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:223887196-223937983
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00224

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000647	SE_00224	chr1	223887196	223889840	2644	1333.43
C000648	SE_00224	chr1	223891886	223912166	20280	3138.17
C000649	SE_00224	chr1	223912311	223916909	4598	3100
C000650	SE_00224	chr1	223917623	223923297	5674	1982.84
C000651	SE_00224	chr1	223923747	223925516	1769	175.13
C000652	SE_00224	chr1	223925520	223928901	3381	1247.96
C000653	SE_00224	chr1	223929372	223932703	3331	805.07
C000654	SE_00224	chr1	223934158	223937983	3825	1878.83