Super Enhancer Details

General details

Super-Enhancer ID:	SE_00225
Genomic locus:	chr3:145841109-145896532
Size/Length:	55423 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_000935
Gene Symbol:	PLOD2
Chromosome:	chr3
TSS:	145787227 (Transcription start site)
TES:	145879282 (Transcription end site)
Strand:	-
Number of Exons:	20
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:145841109-145896532
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00225

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004348	SE_00225	chr3	145841109	145849913	8804	2952.87
C004349	SE_00225	chr3	145850755	145861540	10785	3100
C004350	SE_00225	chr3	145862517	145867487	4970	823.74
C004351	SE_00225	chr3	145869776	145871305	1529	106.66
C004352	SE_00225	chr3	145873134	145886058	12924	3100
C004353	SE_00225	chr3	145894625	145896532	1907	331.88