Super Enhancer Details

General details

Super-Enhancer ID:	SE_00227
Genomic locus:	chr9:101703698-101767342
Size/Length:	63644 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001855
Gene Symbol:	COL15A1
Chromosome:	chr9
TSS:	101705994 (Transcription start site)
TES:	101833074 (Transcription end site)
Strand:	+
Number of Exons:	42
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr9:101703698-101767342
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00227

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005967	SE_00227	chr9	101703698	101712460	8762	3100
C005968	SE_00227	chr9	101719555	101721806	2251	302.98
C005969	SE_00227	chr9	101722511	101725517	3006	654.95
C005970	SE_00227	chr9	101725546	101730818	5272	1924.42
C005971	SE_00227	chr9	101730863	101743171	12308	3100
C005972	SE_00227	chr9	101744801	101747311	2510	681.93
C005973	SE_00227	chr9	101748720	101753450	4730	1253.2
C005974	SE_00227	chr9	101754644	101762414	7770	3100
C005975	SE_00227	chr9	101763674	101765792	2118	228.45
C005976	SE_00227	chr9	101766007	101767342	1335	131.7