Super Enhancer Details

General details

Super-Enhancer ID:	SE_00228
Genomic locus:	chr16:68270633-68335789
Size/Length:	65156 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003983
Gene Symbol:	SLC7A6
Chromosome:	chr16
TSS:	68298418 (Transcription start site)
TES:	68335726 (Transcription end site)
Strand:	+
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr16:68270633-68335789
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00228

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002532	SE_00228	chr16	68270633	68272206	1573	323.01
C002533	SE_00228	chr16	68278281	68281778	3497	416.17
C002534	SE_00228	chr16	68290890	68293379	2489	825.34
C002535	SE_00228	chr16	68297015	68307834	10819	3100
C002536	SE_00228	chr16	68307953	68310983	3030	455.75
C002537	SE_00228	chr16	68312959	68327622	14663	3100
C002538	SE_00228	chr16	68328866	68335789	6923	3100