Super Enhancer Details

General details

Super-Enhancer ID:	SE_00230
Genomic locus:	chr12:125388338-125426129
Size/Length:	37791 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_021009
Gene Symbol:	UBC
Chromosome:	chr12
TSS:	125396190 (Transcription start site)
TES:	125399587 (Transcription end site)
Strand:	-
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr12:125388338-125426129
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00230

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001805	SE_00230	chr12	125388338	125390251	1913	459.19
C001806	SE_00230	chr12	125394062	125396672	2610	784.08
C001807	SE_00230	chr12	125396964	125407152	10188	3100
C001808	SE_00230	chr12	125411456	125414225	2769	2107.95
C001809	SE_00230	chr12	125422206	125426129	3923	2314.2