Super Enhancer Details

General details

Super-Enhancer ID:	SE_00231
Genomic locus:	chr3:156844634-156894808
Size/Length:	50174 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_020307
Gene Symbol:	CCNL1
Chromosome:	chr3
TSS:	156865344 (Transcription start site)
TES:	156878549 (Transcription end site)
Strand:	-
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:156844634-156894808
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00231

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004379	SE_00231	chr3	156844634	156851754	7120	2985.12
C004380	SE_00231	chr3	156852540	156855737	3197	362.29
C004381	SE_00231	chr3	156863255	156864273	1018	108.55
C004382	SE_00231	chr3	156870871	156880613	9742	3100
C004383	SE_00231	chr3	156888232	156894808	6576	3100