Super Enhancer Details

General details

Super-Enhancer ID:	SE_00234
Genomic locus:	chr4:123746505-123833483
Size/Length:	86978 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_002006
Gene Symbol:	FGF2
Chromosome:	chr4
TSS:	123747862 (Transcription start site)
TES:	123819390 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00234

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004558	SE_00234	chr4	123746505	123760157	13652	2801.22
C004559	SE_00234	chr4	123761871	123765320	3449	404.76
C004560	SE_00234	chr4	123766621	123767907	1286	107.63
C004561	SE_00234	chr4	123771450	123773257	1807	217.55
C004562	SE_00234	chr4	123774129	123781658	7529	3100
C004563	SE_00234	chr4	123782066	123785798	3732	368.99
C004564	SE_00234	chr4	123794469	123795958	1489	160.78
C004565	SE_00234	chr4	123796396	123797933	1537	158.71
C004566	SE_00234	chr4	123798822	123800844	2022	289.69
C004567	SE_00234	chr4	123803189	123808112	4923	2148.66
C004568	SE_00234	chr4	123808146	123812141	3995	682.25
C004569	SE_00234	chr4	123816201	123818232	2031	163.56
C004570	SE_00234	chr4	123819189	123821119	1930	393.28
C004571	SE_00234	chr4	123821351	123823620	2269	240.86
C004572	SE_00234	chr4	123830034	123833483	3449	747.73