Super Enhancer Details

General details

Super-Enhancer ID:	SE_00235
Genomic locus:	chr5:95143321-95203380
Size/Length:	60059 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_002064
Gene Symbol:	GLRX
Chromosome:	chr5
TSS:	95149552 (Transcription start site)
TES:	95158577 (Transcription end site)
Strand:	-
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr5:95143321-95203380
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00235

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004801	SE_00235	chr5	95143321	95147138	3817	2087.57
C004802	SE_00235	chr5	95147203	95148734	1531	238.14
C004803	SE_00235	chr5	95150450	95155583	5133	1060.98
C004804	SE_00235	chr5	95155938	95161048	5110	3100
C004805	SE_00235	chr5	95169503	95173191	3688	1046.57
C004806	SE_00235	chr5	95176337	95180785	4448	1811.81
C004807	SE_00235	chr5	95185365	95186772	1407	241.39
C004808	SE_00235	chr5	95191475	95200255	8780	3100
C004809	SE_00235	chr5	95201946	95203380	1434	180.46