Super Enhancer Details

General details

Super-Enhancer ID:	SE_00237
Genomic locus:	chr8:26428248-26501692
Size/Length:	73444 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001386
Gene Symbol:	DPYSL2
Chromosome:	chr8
TSS:	26435920 (Transcription start site)
TES:	26515693 (Transcription end site)
Strand:	+
Number of Exons:	14
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr8:26428248-26501692
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00237

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005656	SE_00237	chr8	26428248	26431177	2929	667.07
C005657	SE_00237	chr8	26432582	26441175	8593	3100
C005658	SE_00237	chr8	26449955	26451999	2044	386.32
C005659	SE_00237	chr8	26452685	26454569	1884	261.37
C005660	SE_00237	chr8	26455288	26457165	1877	232.75
C005661	SE_00237	chr8	26457242	26459058	1816	195.56
C005662	SE_00237	chr8	26465142	26475244	10102	3100
C005663	SE_00237	chr8	26476378	26478152	1774	156.82
C005664	SE_00237	chr8	26481042	26483831	2789	235.94
C005665	SE_00237	chr8	26484712	26487437	2725	659.19
C005666	SE_00237	chr8	26492392	26501692	9300	2415.45