Super Enhancer Details

General details

Super-Enhancer ID:	SE_00239
Genomic locus:	chr2:55310330-55366150
Size/Length:	55820 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_207520
Gene Symbol:	RTN4
Chromosome:	chr2
TSS:	55199326 (Transcription start site)
TES:	55277734 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr2:55310330-55366150
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00239

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003281	SE_00239	chr2	55310330	55311662	1332	111.09
C003282	SE_00239	chr2	55322199	55331208	9009	3100
C003283	SE_00239	chr2	55333983	55335419	1436	116.75
C003284	SE_00239	chr2	55335449	55341307	5858	3100
C003285	SE_00239	chr2	55344287	55348834	4547	3100
C003286	SE_00239	chr2	55360036	55362701	2665	1231.93
C003287	SE_00239	chr2	55362838	55366150	3312	1351.85