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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00240
Genomic locus: chr5:148512944-148610042
Size/Length: 97098 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_014945
Gene Symbol: ABLIM3
Chromosome: chr5
TSS: 148521045 (Transcription start site)
TES: 148640001 (Transcription end site)
Strand: +
Number of Exons: 20
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr5:148512944-148610042
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00240

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C004871 SE_00240 chr5 148512944 148514130 1186 190.86
C004872 SE_00240 chr5 148514155 148519292 5137 1368.51
C004873 SE_00240 chr5 148519469 148525000 5531 2383.62
C004874 SE_00240 chr5 148526573 148537949 11376 3100
C004875 SE_00240 chr5 148538495 148543204 4709 1141.26
C004876 SE_00240 chr5 148544897 148546727 1830 192.86
C004877 SE_00240 chr5 148547685 148548994 1309 101.71
C004878 SE_00240 chr5 148549388 148555973 6585 2090.97
C004879 SE_00240 chr5 148566307 148567571 1264 99.3
C004880 SE_00240 chr5 148573027 148575165 2138 135.97
C004881 SE_00240 chr5 148575204 148577669 2465 523.75
C004882 SE_00240 chr5 148578742 148580515 1773 181.35
C004883 SE_00240 chr5 148584498 148586985 2487 242.63
C004884 SE_00240 chr5 148594212 148596154 1942 212.22
C004885 SE_00240 chr5 148599943 148601401 1458 108.69
C004886 SE_00240 chr5 148601686 148603741 2055 200.18
C004887 SE_00240 chr5 148606313 148610042 3729 986.96