Super Enhancer Details

General details

Super-Enhancer ID:	SE_00241
Genomic locus:	chr4:77868766-77944518
Size/Length:	75752 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_018243
Gene Symbol:	SEPT11
Chromosome:	chr4
TSS:	77870866 (Transcription start site)
TES:	77959768 (Transcription end site)
Strand:	+
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00241

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004485	SE_00241	chr4	77868766	77880257	11491	3100
C004486	SE_00241	chr4	77880555	77882541	1986	467.36
C004487	SE_00241	chr4	77882882	77887983	5101	2221.53
C004488	SE_00241	chr4	77888173	77893506	5333	1434.83
C004489	SE_00241	chr4	77894857	77896511	1654	137.86
C004490	SE_00241	chr4	77897404	77898718	1314	173.34
C004491	SE_00241	chr4	77898735	77902878	4143	386.34
C004492	SE_00241	chr4	77903412	77910431	7019	3100
C004493	SE_00241	chr4	77911775	77912853	1078	94.19
C004494	SE_00241	chr4	77914883	77916314	1431	141.27
C004495	SE_00241	chr4	77922580	77924168	1588	178.5
C004496	SE_00241	chr4	77927039	77934629	7590	924.54
C004497	SE_00241	chr4	77937946	77939185	1239	125.11
C004498	SE_00241	chr4	77941391	77944518	3127	809.02