Super Enhancer Details

General details

Super-Enhancer ID:	SE_00245
Genomic locus:	chr7:30153528-30229069
Size/Length:	75541 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_152793
Gene Symbol:	MTURN
Chromosome:	chr7
TSS:	30174551 (Transcription start site)
TES:	30202381 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr7:30153528-30229069
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00245

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005324	SE_00245	chr7	30153528	30155121	1593	151.21
C005325	SE_00245	chr7	30155588	30157557	1969	445.16
C005326	SE_00245	chr7	30160673	30162401	1728	268.3
C005327	SE_00245	chr7	30162913	30165181	2268	343.03
C005328	SE_00245	chr7	30169944	30185294	15350	3100
C005329	SE_00245	chr7	30189766	30192270	2504	122.88
C005330	SE_00245	chr7	30198970	30204953	5983	3057.67
C005331	SE_00245	chr7	30207895	30214219	6324	2569.76
C005332	SE_00245	chr7	30219936	30225954	6018	2501.84
C005333	SE_00245	chr7	30227959	30229069	1110	111.45