Super Enhancer Details

General details

Super-Enhancer ID:	SE_00246
Genomic locus:	chr7:95210585-95241190
Size/Length:	30605 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_002612
Gene Symbol:	PDK4
Chromosome:	chr7
TSS:	95212808 (Transcription start site)
TES:	95225925 (Transcription end site)
Strand:	-
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00246

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005429	SE_00246	chr7	95210585	95212653	2068	117.24
C005430	SE_00246	chr7	95213285	95229924	16639	3100
C005431	SE_00246	chr7	95231009	95234416	3407	827.8
C005432	SE_00246	chr7	95235976	95241190	5214	3100