Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: SE_00247
Genomic locus: chr21:45122017-45204067
Size/Length: 82050 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_003681
Gene Symbol: PDXK
Chromosome: chr21
TSS: 45138977 (Transcription start site)
TES: 45182188 (Transcription end site)
Strand: +
Number of Exons: 11
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00247

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C003822 SE_00247 chr21 45122017 45124522 2505 1028.35
C003823 SE_00247 chr21 45130345 45133295 2950 563.33
C003824 SE_00247 chr21 45138586 45142722 4136 2222.69
C003825 SE_00247 chr21 45143011 45144589 1578 157.52
C003826 SE_00247 chr21 45144991 45153132 8141 3100
C003827 SE_00247 chr21 45153136 45157947 4811 1415.11
C003828 SE_00247 chr21 45159763 45160829 1066 92.17
C003829 SE_00247 chr21 45169219 45170570 1351 234.79
C003830 SE_00247 chr21 45175186 45180108 4922 2335.22
C003831 SE_00247 chr21 45183479 45189887 6408 2488
C003832 SE_00247 chr21 45190566 45191856 1290 170.96
C003833 SE_00247 chr21 45192004 45196986 4982 1510.68
C003834 SE_00247 chr21 45197596 45199562 1966 758.4
C003835 SE_00247 chr21 45202225 45204067 1842 349.15