Super Enhancer Details

General details

Super-Enhancer ID:	SE_00247
Genomic locus:	chr21:45122017-45204067
Size/Length:	82050 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003681
Gene Symbol:	PDXK
Chromosome:	chr21
TSS:	45138977 (Transcription start site)
TES:	45182188 (Transcription end site)
Strand:	+
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00247

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003822	SE_00247	chr21	45122017	45124522	2505	1028.35
C003823	SE_00247	chr21	45130345	45133295	2950	563.33
C003824	SE_00247	chr21	45138586	45142722	4136	2222.69
C003825	SE_00247	chr21	45143011	45144589	1578	157.52
C003826	SE_00247	chr21	45144991	45153132	8141	3100
C003827	SE_00247	chr21	45153136	45157947	4811	1415.11
C003828	SE_00247	chr21	45159763	45160829	1066	92.17
C003829	SE_00247	chr21	45169219	45170570	1351	234.79
C003830	SE_00247	chr21	45175186	45180108	4922	2335.22
C003831	SE_00247	chr21	45183479	45189887	6408	2488
C003832	SE_00247	chr21	45190566	45191856	1290	170.96
C003833	SE_00247	chr21	45192004	45196986	4982	1510.68
C003834	SE_00247	chr21	45197596	45199562	1966	758.4
C003835	SE_00247	chr21	45202225	45204067	1842	349.15