Super Enhancer Details

General details

Super-Enhancer ID:	SE_00248
Genomic locus:	chr10:14576958-14648642
Size/Length:	71684 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001029954
Gene Symbol:	CDNF
Chromosome:	chr10
TSS:	14861250 (Transcription start site)
TES:	14879983 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr10:14576958-14648642
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00248

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000770	SE_00248	chr10	14576958	14579840	2882	902.87
C000771	SE_00248	chr10	14584329	14587201	2872	330.03
C000772	SE_00248	chr10	14589652	14593323	3671	1249.63
C000773	SE_00248	chr10	14594492	14600213	5721	2861.68
C000774	SE_00248	chr10	14600389	14608495	8106	2526.12
C000775	SE_00248	chr10	14609164	14611216	2052	448.31
C000776	SE_00248	chr10	14612484	14614754	2270	447.04
C000777	SE_00248	chr10	14615321	14617846	2525	543.72
C000778	SE_00248	chr10	14618371	14623461	5090	3100
C000779	SE_00248	chr10	14629128	14631419	2291	356.5
C000780	SE_00248	chr10	14634262	14635690	1428	148.19
C000781	SE_00248	chr10	14635744	14637374	1630	152.14
C000782	SE_00248	chr10	14642609	14648642	6033	3124.1