Super Enhancer Details

General details

Super-Enhancer ID:	SE_00249
Genomic locus:	chr2:43128030-43196466
Size/Length:	68436 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_012205
Gene Symbol:	HAAO
Chromosome:	chr2
TSS:	42994228 (Transcription start site)
TES:	43019751 (Transcription end site)
Strand:	-
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00249

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003183	SE_00249	chr2	43128030	43129387	1357	118.26
C003184	SE_00249	chr2	43130206	43136208	6002	3100
C003185	SE_00249	chr2	43143914	43145285	1371	140.45
C003186	SE_00249	chr2	43147958	43158400	10442	3100
C003187	SE_00249	chr2	43158730	43161490	2760	406.73
C003188	SE_00249	chr2	43173303	43174541	1238	94.02
C003189	SE_00249	chr2	43178022	43180667	2645	506.29
C003190	SE_00249	chr2	43181266	43182432	1166	100.59
C003191	SE_00249	chr2	43185534	43191017	5483	2065.97
C003192	SE_00249	chr2	43191582	43192829	1247	95.27
C003193	SE_00249	chr2	43193981	43196466	2485	416.84