Super Enhancer Details

General details

Super-Enhancer ID:	SE_00250
Genomic locus:	chr2:69654978-69722789
Size/Length:	67811 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001002755
Gene Symbol:	NFU1
Chromosome:	chr2
TSS:	69623244 (Transcription start site)
TES:	69664760 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00250

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003346	SE_00250	chr2	69654978	69658505	3527	671.29
C003347	SE_00250	chr2	69661308	69666445	5137	3100
C003348	SE_00250	chr2	69676968	69678683	1715	213.64
C003349	SE_00250	chr2	69679630	69681392	1762	191.87
C003350	SE_00250	chr2	69690816	69703170	12354	3100
C003351	SE_00250	chr2	69703415	69711140	7725	2733.82
C003352	SE_00250	chr2	69713424	69714716	1292	102.77
C003353	SE_00250	chr2	69714922	69722789	7867	3100