Super Enhancer Details

General details

Super-Enhancer ID:	SE_00251
Genomic locus:	chr6:137511487-137563677
Size/Length:	52190 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_000416
Gene Symbol:	IFNGR1
Chromosome:	chr6
TSS:	137518620 (Transcription start site)
TES:	137540567 (Transcription end site)
Strand:	-
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr6:137511487-137563677
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00251

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005243	SE_00251	chr6	137511487	137514211	2724	565.43
C005244	SE_00251	chr6	137516395	137518034	1639	103.47
C005245	SE_00251	chr6	137521171	137522880	1709	120.57
C005246	SE_00251	chr6	137524109	137528510	4401	350.39
C005247	SE_00251	chr6	137530306	137545542	15236	3100
C005248	SE_00251	chr6	137548054	137550157	2103	369.11
C005249	SE_00251	chr6	137553889	137556616	2727	1402.96
C005250	SE_00251	chr6	137557780	137559706	1926	158.3
C005251	SE_00251	chr6	137560868	137563677	2809	589.65