Super Enhancer Details

General details

Super-Enhancer ID:	SE_00252
Genomic locus:	chr2:20766704-20835926
Size/Length:	69222 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_022460
Gene Symbol:	HS1BP3
Chromosome:	chr2
TSS:	20817563 (Transcription start site)
TES:	20850864 (Transcription end site)
Strand:	-
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00252

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003122	SE_00252	chr2	20766704	20775774	9070	3179.12
C003123	SE_00252	chr2	20777587	20781075	3488	2794.54
C003124	SE_00252	chr2	20785621	20787224	1603	102.52
C003125	SE_00252	chr2	20792271	20800652	8381	3100
C003126	SE_00252	chr2	20803919	20805700	1781	142.06
C003127	SE_00252	chr2	20808447	20809785	1338	147.6
C003128	SE_00252	chr2	20810192	20821003	10811	3100
C003129	SE_00252	chr2	20824129	20827235	3106	1129.26
C003130	SE_00252	chr2	20833914	20835926	2012	219.02