Super Enhancer Details

General details

Super-Enhancer ID:	SE_00253
Genomic locus:	chr3:191031189-191114875
Size/Length:	83686 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_198152
Gene Symbol:	UTS2B
Chromosome:	chr3
TSS:	190984943 (Transcription start site)
TES:	191048325 (Transcription end site)
Strand:	-
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:191031189-191114875
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00253

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004451	SE_00253	chr3	191031189	191033136	1947	378.75
C004452	SE_00253	chr3	191037987	191039495	1508	98.24
C004453	SE_00253	chr3	191045307	191065295	19988	3100
C004454	SE_00253	chr3	191065675	191072214	6539	1147.62
C004455	SE_00253	chr3	191072982	191075660	2678	503.53
C004456	SE_00253	chr3	191077142	191078539	1397	103.65
C004457	SE_00253	chr3	191083310	191086456	3146	585.19
C004458	SE_00253	chr3	191093263	191098342	5079	1413.79
C004459	SE_00253	chr3	191104696	191106103	1407	137.79
C004460	SE_00253	chr3	191112010	191114875	2865	137.29