Super Enhancer Details

General details

Super-Enhancer ID:	SE_00255
Genomic locus:	chr22:33175434-33254783
Size/Length:	79349 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_000362
Gene Symbol:	TIMP3
Chromosome:	chr22
TSS:	33196801 (Transcription start site)
TES:	33259028 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00255

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003893	SE_00255	chr22	33175434	33177024	1590	224.12
C003894	SE_00255	chr22	33177060	33178208	1148	127.44
C003895	SE_00255	chr22	33178436	33179538	1102	106.91
C003896	SE_00255	chr22	33184748	33186359	1611	178.4
C003897	SE_00255	chr22	33195298	33203540	8242	3100
C003898	SE_00255	chr22	33203695	33211065	7370	1675.49
C003899	SE_00255	chr22	33211347	33220161	8814	720.03
C003900	SE_00255	chr22	33220565	33221454	889	104.36
C003901	SE_00255	chr22	33222104	33228941	6837	2710.62
C003902	SE_00255	chr22	33233941	33237632	3691	457.86
C003903	SE_00255	chr22	33237809	33239242	1433	116.55
C003904	SE_00255	chr22	33241015	33251458	10443	3100
C003905	SE_00255	chr22	33253223	33254783	1560	212.83