Super Enhancer Details

General details

Super-Enhancer ID:	SE_00260
Genomic locus:	chr6:108877884-108945884
Size/Length:	68000 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001455
Gene Symbol:	FOXO3
Chromosome:	chr6
TSS:	108881025 (Transcription start site)
TES:	109005971 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr6:108877884-108945884
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00260

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005167	SE_00260	chr6	108877884	108889068	11184	3100
C005168	SE_00260	chr6	108899110	108901188	2078	98.18
C005169	SE_00260	chr6	108901354	108905012	3658	1589.68
C005170	SE_00260	chr6	108906364	108908274	1910	139.24
C005171	SE_00260	chr6	108908559	108914817	6258	3100
C005172	SE_00260	chr6	108916596	108921395	4799	949.12
C005173	SE_00260	chr6	108929171	108932695	3524	407.34
C005174	SE_00260	chr6	108934696	108936743	2047	188.85
C005175	SE_00260	chr6	108937735	108938876	1141	112.72
C005176	SE_00260	chr6	108939443	108941064	1621	162.65
C005177	SE_00260	chr6	108942181	108945884	3703	561.15