Super Enhancer Details

General details

Super-Enhancer ID:	SE_00261
Genomic locus:	chr3:118996470-119077351
Size/Length:	80881 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_020754
Gene Symbol:	ARHGAP31
Chromosome:	chr3
TSS:	119013219 (Transcription start site)
TES:	119138323 (Transcription end site)
Strand:	+
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00261

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004246	SE_00261	chr3	118996470	118999601	3131	1169.98
C004247	SE_00261	chr3	119011371	119018151	6780	3100
C004248	SE_00261	chr3	119019347	119021676	2329	147.84
C004249	SE_00261	chr3	119023730	119025180	1450	198.43
C004250	SE_00261	chr3	119028113	119031323	3210	136.99
C004251	SE_00261	chr3	119038459	119044502	6043	3100
C004252	SE_00261	chr3	119049951	119054842	4891	731.19
C004253	SE_00261	chr3	119058880	119060424	1544	201.34
C004254	SE_00261	chr3	119065268	119074372	9104	2457.4
C004255	SE_00261	chr3	119075118	119077351	2233	512.23