Super Enhancer Details

General details

Super-Enhancer ID:	SE_00263
Genomic locus:	chr6:17863073-17936477
Size/Length:	73404 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_005124
Gene Symbol:	NUP153
Chromosome:	chr6
TSS:	17615265 (Transcription start site)
TES:	17707065 (Transcription end site)
Strand:	-
Number of Exons:	23
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr6:17863073-17936477
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00263

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005070	SE_00263	chr6	17863073	17867125	4052	1474.97
C005071	SE_00263	chr6	17867146	17872790	5644	600.81
C005072	SE_00263	chr6	17884323	17887265	2942	363.26
C005073	SE_00263	chr6	17899520	17901007	1487	211.75
C005074	SE_00263	chr6	17901587	17909304	7717	2694.47
C005075	SE_00263	chr6	17910150	17911329	1179	118.15
C005076	SE_00263	chr6	17923205	17926827	3622	654.9
C005077	SE_00263	chr6	17927272	17936477	9205	3100