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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00265
Genomic locus: chr3:13554259-13655869
Size/Length: 101610 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001998
Gene Symbol: FBLN2
Chromosome: chr3
TSS: 13610239 (Transcription start site)
TES: 13679922 (Transcription end site)
Strand: +
Number of Exons: 18
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00265

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C003975 SE_00265 chr3 13554259 13561642 7383 1452.32
C003976 SE_00265 chr3 13566288 13568640 2352 414.43
C003977 SE_00265 chr3 13570004 13571266 1262 97.64
C003978 SE_00265 chr3 13577145 13581481 4336 724.84
C003979 SE_00265 chr3 13584006 13592874 8868 1987.22
C003980 SE_00265 chr3 13593826 13596931 3105 781.51
C003981 SE_00265 chr3 13596960 13600199 3239 1158.66
C003982 SE_00265 chr3 13600395 13603378 2983 420.53
C003983 SE_00265 chr3 13609696 13611435 1739 159.59
C003984 SE_00265 chr3 13615365 13622604 7239 1452.9
C003985 SE_00265 chr3 13622642 13624583 1941 233.87
C003986 SE_00265 chr3 13628824 13631808 2984 1247.18
C003987 SE_00265 chr3 13631861 13634681 2820 402.59
C003988 SE_00265 chr3 13635424 13637001 1577 176.92
C003989 SE_00265 chr3 13639542 13641593 2051 416.48
C003990 SE_00265 chr3 13642034 13643777 1743 165.89
C003991 SE_00265 chr3 13652524 13655869 3345 761.09