Super Enhancer Details

General details

Super-Enhancer ID:	SE_00266
Genomic locus:	chr3:43326138-43374825
Size/Length:	48687 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_016006
Gene Symbol:	ABHD5
Chromosome:	chr3
TSS:	43732374 (Transcription start site)
TES:	43764217 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:43326138-43374825
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00266

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004088	SE_00266	chr3	43326138	43337563	11425	3100
C004089	SE_00266	chr3	43337885	43342339	4454	403.56
C004090	SE_00266	chr3	43351772	43353683	1911	133.17
C004091	SE_00266	chr3	43355606	43364612	9006	3100
C004092	SE_00266	chr3	43366361	43374825	8464	3100