Super Enhancer Details

General details

Super-Enhancer ID:	SE_00268
Genomic locus:	chr7:120627161-120682742
Size/Length:	55581 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001105533
Gene Symbol:	CPED1
Chromosome:	chr7
TSS:	120628750 (Transcription start site)
TES:	120937498 (Transcription end site)
Strand:	+
Number of Exons:	23
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00268

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005506	SE_00268	chr7	120627161	120637483	10322	3100
C005507	SE_00268	chr7	120638063	120644081	6018	296.18
C005508	SE_00268	chr7	120651930	120653936	2006	449.32
C005509	SE_00268	chr7	120654806	120656164	1358	98.26
C005510	SE_00268	chr7	120656204	120665642	9438	2907.75
C005511	SE_00268	chr7	120667946	120669115	1169	119.95
C005512	SE_00268	chr7	120681255	120682742	1487	251.37