Super Enhancer Details

General details

Super-Enhancer ID:	SE_00269
Genomic locus:	chr10:7640545-7711911
Size/Length:	71366 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_030569
Gene Symbol:	ITIH5
Chromosome:	chr10
TSS:	7601231 (Transcription start site)
TES:	7661636 (Transcription end site)
Strand:	-
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr10:7640545-7711911
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00269

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000726	SE_00269	chr10	7640545	7641771	1226	95.08
C000727	SE_00269	chr10	7642824	7644297	1473	165.02
C000728	SE_00269	chr10	7648044	7650248	2204	399.37
C000729	SE_00269	chr10	7650609	7657011	6402	3074.17
C000730	SE_00269	chr10	7659774	7661853	2079	143.74
C000731	SE_00269	chr10	7663616	7665877	2261	169.57
C000732	SE_00269	chr10	7666797	7669784	2987	1744.74
C000733	SE_00269	chr10	7673715	7678732	5017	3087.65
C000734	SE_00269	chr10	7686975	7689267	2292	298
C000735	SE_00269	chr10	7689741	7693467	3726	2550.76
C000736	SE_00269	chr10	7696219	7698944	2725	537.01
C000737	SE_00269	chr10	7699091	7711911	12820	2233.42