Super Enhancer Details

General details

Super-Enhancer ID:	SE_00270
Genomic locus:	chr7:106618925-106721216
Size/Length:	102291 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_002736
Gene Symbol:	PRKAR2B
Chromosome:	chr7
TSS:	106685177 (Transcription start site)
TES:	106802256 (Transcription end site)
Strand:	+
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00270

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005449	SE_00270	chr7	106618925	106621825	2900	1366.93
C005450	SE_00270	chr7	106626172	106629963	3791	1777.98
C005451	SE_00270	chr7	106635965	106640278	4313	1864.2
C005452	SE_00270	chr7	106641020	106646059	5039	841.48
C005453	SE_00270	chr7	106646879	106649018	2139	423.6
C005454	SE_00270	chr7	106654580	106655989	1409	118.44
C005455	SE_00270	chr7	106658069	106659445	1376	127.48
C005456	SE_00270	chr7	106663784	106669326	5542	1071.18
C005457	SE_00270	chr7	106677600	106680707	3107	422.65
C005458	SE_00270	chr7	106683654	106693411	9757	3080.64
C005459	SE_00270	chr7	106693419	106694996	1577	163.98
C005460	SE_00270	chr7	106696933	106700035	3102	1037.6
C005461	SE_00270	chr7	106700888	106712413	11525	880.02
C005462	SE_00270	chr7	106715836	106721216	5380	1211.67