Super Enhancer Details

General details

Super-Enhancer ID:	SE_00272
Genomic locus:	chr3:138065722-138117229
Size/Length:	51507 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001085049
Gene Symbol:	MRAS
Chromosome:	chr3
TSS:	138067507 (Transcription start site)
TES:	138124377 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:138065722-138117229
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00272

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004331	SE_00272	chr3	138065722	138072986	7264	3100
C004332	SE_00272	chr3	138074661	138092561	17900	1484.05
C004333	SE_00272	chr3	138093007	138095630	2623	306.47
C004334	SE_00272	chr3	138096138	138097858	1720	248.99
C004335	SE_00272	chr3	138099318	138104302	4984	3100
C004336	SE_00272	chr3	138104326	138117229	12903	3100