Super Enhancer Details

General details

Super-Enhancer ID:	SE_00273
Genomic locus:	chr8:61424969-61476834
Size/Length:	51865 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_002865
Gene Symbol:	RAB2A
Chromosome:	chr8
TSS:	61429468 (Transcription start site)
TES:	61536203 (Transcription end site)
Strand:	+
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr8:61424969-61476834
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00273

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005734	SE_00273	chr8	61424969	61439010	14041	3100
C005735	SE_00273	chr8	61439900	61450270	10370	2657.19
C005736	SE_00273	chr8	61450521	61452171	1650	206.65
C005737	SE_00273	chr8	61452299	61456546	4247	815.41
C005738	SE_00273	chr8	61462783	61464387	1604	173.87
C005739	SE_00273	chr8	61465668	61467548	1880	196.31
C005740	SE_00273	chr8	61469050	61476834	7784	1536.64