Super Enhancer Details

General details

Super-Enhancer ID:	SE_00275
Genomic locus:	chr11:33709545-33767150
Size/Length:	57605 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001127225
Gene Symbol:	CD59
Chromosome:	chr11
TSS:	33724555 (Transcription start site)
TES:	33744498 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00275

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001184	SE_00275	chr11	33709545	33717892	8347	3100
C001185	SE_00275	chr11	33721176	33729989	8813	3097.18
C001186	SE_00275	chr11	33736756	33739002	2246	332.68
C001187	SE_00275	chr11	33741162	33747692	6530	3100
C001188	SE_00275	chr11	33753384	33759376	5992	3100
C001189	SE_00275	chr11	33764749	33767150	2401	159.93