Super Enhancer Details

General details

Super-Enhancer ID:	SE_00277
Genomic locus:	chr5:52052598-52138481
Size/Length:	85883 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_181501
Gene Symbol:	ITGA1
Chromosome:	chr5
TSS:	52084135 (Transcription start site)
TES:	52249485 (Transcription end site)
Strand:	+
Number of Exons:	29
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00277

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004729	SE_00277	chr5	52052598	52055102	2504	307.34
C004730	SE_00277	chr5	52066878	52070816	3938	419.7
C004731	SE_00277	chr5	52078105	52080238	2133	299.33
C004732	SE_00277	chr5	52081762	52089781	8019	3100
C004733	SE_00277	chr5	52090968	52100914	9946	3100
C004734	SE_00277	chr5	52105540	52107075	1535	111.23
C004735	SE_00277	chr5	52110215	52112055	1840	237.93
C004736	SE_00277	chr5	52116987	52120330	3343	932.26
C004737	SE_00277	chr5	52125371	52127331	1960	176.77
C004738	SE_00277	chr5	52131749	52135234	3485	1842.36
C004739	SE_00277	chr5	52135501	52138481	2980	287.8