Super Enhancer Details

General details

Super-Enhancer ID:	SE_00278
Genomic locus:	chr1:65354735-65433301
Size/Length:	78566 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_002227
Gene Symbol:	JAK1
Chromosome:	chr1
TSS:	65298905 (Transcription start site)
TES:	65432187 (Transcription end site)
Strand:	-
Number of Exons:	25
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:65354735-65433301
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00278

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000242	SE_00278	chr1	65354735	65361286	6551	1644.49
C000243	SE_00278	chr1	65361857	65363163	1306	118.35
C000244	SE_00278	chr1	65363196	65365751	2555	1303.5
C000245	SE_00278	chr1	65376703	65379023	2320	113.59
C000246	SE_00278	chr1	65379167	65380350	1183	95.57
C000247	SE_00278	chr1	65380890	65384708	3818	1804.55
C000248	SE_00278	chr1	65385081	65389766	4685	1657.11
C000249	SE_00278	chr1	65396713	65404604	7891	3100
C000250	SE_00278	chr1	65406593	65409767	3174	626.42
C000251	SE_00278	chr1	65409776	65411797	2021	256.86
C000252	SE_00278	chr1	65413698	65417351	3653	265.18
C000253	SE_00278	chr1	65420525	65423180	2655	96.94
C000254	SE_00278	chr1	65430083	65433301	3218	1664.16