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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00280
Genomic locus: chr14:69009414-69106829
Size/Length: 97415 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_004926
Gene Symbol: ZFP36L1
Chromosome: chr14
TSS: 69254371 (Transcription start site)
TES: 69260631 (Transcription end site)
Strand: -
Number of Exons: 2
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr14:69009414-69106829
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00280

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C002035 SE_00280 chr14 69009414 69012733 3319 1134.53
C002036 SE_00280 chr14 69013195 69016338 3143 1065.48
C002037 SE_00280 chr14 69019083 69020446 1363 165.91
C002038 SE_00280 chr14 69020581 69023131 2550 248.62
C002039 SE_00280 chr14 69028682 69034049 5367 3100
C002040 SE_00280 chr14 69034986 69038171 3185 1459.19
C002041 SE_00280 chr14 69041074 69045280 4206 732.79
C002042 SE_00280 chr14 69055526 69058150 2624 459.31
C002043 SE_00280 chr14 69063286 69067231 3945 3100
C002044 SE_00280 chr14 69069882 69071014 1132 103.89
C002045 SE_00280 chr14 69073484 69075277 1793 172.63
C002046 SE_00280 chr14 69078335 69079915 1580 187.19
C002047 SE_00280 chr14 69087995 69089357 1362 118.56
C002048 SE_00280 chr14 69095687 69101381 5694 3100
C002049 SE_00280 chr14 69105467 69106829 1362 136.22