Super Enhancer Details

General details

Super-Enhancer ID:	SE_00281
Genomic locus:	chr20:48717052-48789891
Size/Length:	72839 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001162505
Gene Symbol:	TMEM189
Chromosome:	chr20
TSS:	48740273 (Transcription start site)
TES:	48770335 (Transcription end site)
Strand:	-
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00281

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003710	SE_00281	chr20	48717052	48718364	1312	154.19
C003711	SE_00281	chr20	48726522	48731221	4699	2901.04
C003712	SE_00281	chr20	48731711	48733230	1519	248.29
C003713	SE_00281	chr20	48737158	48739148	1990	356.46
C003714	SE_00281	chr20	48742250	48744364	2114	308.95
C003715	SE_00281	chr20	48745907	48748152	2245	137.4
C003716	SE_00281	chr20	48749184	48750844	1660	213.96
C003717	SE_00281	chr20	48752183	48757859	5676	3100
C003718	SE_00281	chr20	48759254	48771376	12122	3100
C003719	SE_00281	chr20	48779109	48783598	4489	2024.33
C003720	SE_00281	chr20	48787673	48789891	2218	467.51