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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00282
Genomic locus: chr15:85292050-85389378
Size/Length: 97328 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_020778
Gene Symbol: ALPK3
Chromosome: chr15
TSS: 85359910 (Transcription start site)
TES: 85416713 (Transcription end site)
Strand: +
Number of Exons: 14
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00282

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C002374 SE_00282 chr15 85292050 85294818 2768 1566.6
C002375 SE_00282 chr15 85295007 85296698 1691 204.14
C002376 SE_00282 chr15 85296923 85297890 967 102.18
C002377 SE_00282 chr15 85298730 85300500 1770 306.91
C002378 SE_00282 chr15 85304258 85308517 4259 1354.45
C002379 SE_00282 chr15 85309107 85310363 1256 104.01
C002380 SE_00282 chr15 85322646 85324119 1473 156.1
C002381 SE_00282 chr15 85328988 85329967 979 107.3
C002382 SE_00282 chr15 85330266 85332260 1994 188.61
C002383 SE_00282 chr15 85334264 85335766 1502 249.68
C002384 SE_00282 chr15 85345685 85349066 3381 477.12
C002385 SE_00282 chr15 85352879 85354329 1450 145.84
C002386 SE_00282 chr15 85358648 85363857 5209 3100
C002387 SE_00282 chr15 85363970 85368593 4623 325.45
C002388 SE_00282 chr15 85370755 85372721 1966 176.07
C002389 SE_00282 chr15 85373524 85379233 5709 1340.29
C002390 SE_00282 chr15 85381876 85386834 4958 3100
C002391 SE_00282 chr15 85387670 85389378 1708 363.67