Super Enhancer Details

General details

Super-Enhancer ID:	SE_00283
Genomic locus:	chr7:36191217-36286247
Size/Length:	95030 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_030636
Gene Symbol:	EEPD1
Chromosome:	chr7
TSS:	36192835 (Transcription start site)
TES:	36341152 (Transcription end site)
Strand:	+
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00283

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005337	SE_00283	chr7	36191217	36204647	13430	3100
C005338	SE_00283	chr7	36205192	36206283	1091	127.37
C005339	SE_00283	chr7	36214604	36216911	2307	557.63
C005340	SE_00283	chr7	36220501	36223888	3387	649.25
C005341	SE_00283	chr7	36225135	36226879	1744	308.09
C005342	SE_00283	chr7	36231807	36233146	1339	145.09
C005343	SE_00283	chr7	36237897	36239814	1917	285.66
C005344	SE_00283	chr7	36241501	36243056	1555	164.63
C005345	SE_00283	chr7	36243843	36251627	7784	3120.67
C005346	SE_00283	chr7	36252380	36259364	6984	1364.29
C005347	SE_00283	chr7	36263797	36267612	3815	636.3
C005348	SE_00283	chr7	36270537	36273513	2976	333.35
C005349	SE_00283	chr7	36282577	36284554	1977	249.8
C005350	SE_00283	chr7	36284568	36286247	1679	123.55