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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00283
Genomic locus: chr7:36191217-36286247
Size/Length: 95030 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_030636
Gene Symbol: EEPD1
Chromosome: chr7
TSS: 36192835 (Transcription start site)
TES: 36341152 (Transcription end site)
Strand: +
Number of Exons: 8
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00283

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C005337 SE_00283 chr7 36191217 36204647 13430 3100
C005338 SE_00283 chr7 36205192 36206283 1091 127.37
C005339 SE_00283 chr7 36214604 36216911 2307 557.63
C005340 SE_00283 chr7 36220501 36223888 3387 649.25
C005341 SE_00283 chr7 36225135 36226879 1744 308.09
C005342 SE_00283 chr7 36231807 36233146 1339 145.09
C005343 SE_00283 chr7 36237897 36239814 1917 285.66
C005344 SE_00283 chr7 36241501 36243056 1555 164.63
C005345 SE_00283 chr7 36243843 36251627 7784 3120.67
C005346 SE_00283 chr7 36252380 36259364 6984 1364.29
C005347 SE_00283 chr7 36263797 36267612 3815 636.3
C005348 SE_00283 chr7 36270537 36273513 2976 333.35
C005349 SE_00283 chr7 36282577 36284554 1977 249.8
C005350 SE_00283 chr7 36284568 36286247 1679 123.55