Super Enhancer Details

General details

Super-Enhancer ID:	SE_00284
Genomic locus:	chr1:151915786-151974621
Size/Length:	58835 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_002966
Gene Symbol:	S100A10
Chromosome:	chr1
TSS:	151955385 (Transcription start site)
TES:	151966714 (Transcription end site)
Strand:	-
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00284

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000445	SE_00284	chr1	151915786	151920328	4542	1956.51
C000446	SE_00284	chr1	151932766	151934493	1727	116.11
C000447	SE_00284	chr1	151940113	151942488	2375	569.74
C000448	SE_00284	chr1	151951696	151968835	17139	3100
C000449	SE_00284	chr1	151972648	151974621	1973	554.47