Super Enhancer Details

General details

Super-Enhancer ID:	SE_00285
Genomic locus:	chr1:94017208-94095683
Size/Length:	78475 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003567
Gene Symbol:	BCAR3
Chromosome:	chr1
TSS:	94027342 (Transcription start site)
TES:	94146926 (Transcription end site)
Strand:	-
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00285

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000322	SE_00285	chr1	94017208	94022740	5532	590.58
C000323	SE_00285	chr1	94030383	94033619	3236	596.78
C000324	SE_00285	chr1	94034247	94035811	1564	144.29
C000325	SE_00285	chr1	94039502	94040500	998	92.72
C000326	SE_00285	chr1	94048823	94052046	3223	1737.68
C000327	SE_00285	chr1	94056804	94066733	9929	3100
C000328	SE_00285	chr1	94072601	94074750	2149	495.23
C000329	SE_00285	chr1	94076272	94085030	8758	3100
C000330	SE_00285	chr1	94093691	94095683	1992	200.14