Super Enhancer Details

General details

Super-Enhancer ID:	SE_00286
Genomic locus:	chr12:60057128-60132817
Size/Length:	75689 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_153377
Gene Symbol:	LRIG3
Chromosome:	chr12
TSS:	59265936 (Transcription start site)
TES:	59313327 (Transcription end site)
Strand:	-
Number of Exons:	19
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr12:60057128-60132817
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00286

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001674	SE_00286	chr12	60057128	60065702	8574	3100
C001675	SE_00286	chr12	60066015	60074373	8358	2450.72
C001676	SE_00286	chr12	60076829	60080770	3941	505.59
C001677	SE_00286	chr12	60080903	60082747	1844	139.43
C001678	SE_00286	chr12	60087400	60097796	10396	2501.39
C001679	SE_00286	chr12	60098272	60107002	8730	1806.48
C001680	SE_00286	chr12	60109647	60113237	3590	378.73
C001681	SE_00286	chr12	60116814	60120840	4026	544.64
C001682	SE_00286	chr12	60129678	60132817	3139	646.52