Super Enhancer Details

General details

Super-Enhancer ID:	SE_00287
Genomic locus:	chr9:35463912-35554685
Size/Length:	90773 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_014806
Gene Symbol:	RUSC2
Chromosome:	chr9
TSS:	35538628 (Transcription start site)
TES:	35561895 (Transcription end site)
Strand:	+
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00287

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005914	SE_00287	chr9	35463912	35465219	1307	105.18
C005915	SE_00287	chr9	35475605	35476941	1336	115.1
C005916	SE_00287	chr9	35487795	35493457	5662	3100
C005917	SE_00287	chr9	35497056	35498523	1467	160.17
C005918	SE_00287	chr9	35498607	35501670	3063	545.29
C005919	SE_00287	chr9	35509050	35515288	6238	3100
C005920	SE_00287	chr9	35515992	35523267	7275	3100
C005921	SE_00287	chr9	35524709	35527578	2869	342.17
C005922	SE_00287	chr9	35536578	35541202	4624	2521.3
C005923	SE_00287	chr9	35552305	35554685	2380	662.26