Super Enhancer Details

General details

Super-Enhancer ID:	SE_00289
Genomic locus:	chr3:123081878-123165713
Size/Length:	83835 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_198402
Gene Symbol:	PTPLB
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:123081878-123165713
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00289

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004263	SE_00289	chr3	123081878	123086456	4578	852.31
C004264	SE_00289	chr3	123091211	123093784	2573	218.5
C004265	SE_00289	chr3	123097978	123100462	2484	413.27
C004266	SE_00289	chr3	123101601	123103562	1961	206.13
C004267	SE_00289	chr3	123104104	123109089	4985	697.92
C004268	SE_00289	chr3	123109146	123126804	17658	3100
C004269	SE_00289	chr3	123129326	123132888	3562	562.38
C004270	SE_00289	chr3	123140030	123144998	4968	1640.18
C004271	SE_00289	chr3	123150421	123153838	3417	830.42
C004272	SE_00289	chr3	123163625	123165713	2088	146.96