Super Enhancer Details

General details

Super-Enhancer ID:	SE_00290
Genomic locus:	chr2:232467406-232509788
Size/Length:	42382 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001099285
Gene Symbol:	PTMA
Chromosome:	chr2
TSS:	232573234 (Transcription start site)
TES:	232578250 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00290

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003617	SE_00290	chr2	232467406	232471301	3895	2863.71
C003618	SE_00290	chr2	232475951	232480737	4786	3100
C003619	SE_00290	chr2	232484495	232487313	2818	685.75
C003620	SE_00290	chr2	232489341	232494501	5160	3100
C003621	SE_00290	chr2	232495610	232500775	5165	2801.38
C003622	SE_00290	chr2	232503193	232509788	6595	3100