Super Enhancer Details

General details

Super-Enhancer ID:	SE_00291
Genomic locus:	chr16:66535918-66584785
Size/Length:	48867 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001172643
Gene Symbol:	TK2
Chromosome:	chr16
TSS:	66541905 (Transcription start site)
TES:	66584315 (Transcription end site)
Strand:	-
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00291

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002524	SE_00291	chr16	66535918	66538637	2719	1156.2
C002525	SE_00291	chr16	66541312	66548527	7215	3100
C002526	SE_00291	chr16	66548962	66558566	9604	3100
C002527	SE_00291	chr16	66567586	66570140	2554	251.43
C002528	SE_00291	chr16	66570342	66571782	1440	134.41
C002529	SE_00291	chr16	66572034	66573474	1440	200.48
C002530	SE_00291	chr16	66575339	66576997	1658	223.07
C002531	SE_00291	chr16	66580949	66584785	3836	2039.69